![]() BestKeeper© Software Determination
of stable housekeeping genes, differentially regulated target genes and
sample integrity: Determination of stable
housekeeping genes, differentially regulated target genes Michael W. Pfaffl, Aleš Tichopád, Christian Prgomet, Tanja P. Neuvians The stability of standard gene expression is an elementary prerequisite for internal standardisation of target gene expression data and many so called housekeeping genes with assumed stable expression can exhibit either upor down-regulation under some experimental conditions. The developed, and herein presented, software called BestKeeper determines the best suited standards, out of ten candidates, and combines them into an index. The index can be compared with further ten target genes to decide, whether they are differentially expressed under an applied treatment. All data processing is based on crossing points. The BestKeeper software tool was validated on four housekeeping genes and 10 members of the somatotropic axis differentially expressed in bovine corpora lutea total RNA. The BestKeeper application and necessary information about data processing and handling can be downloaded on here.
=> download BestKeeper
version 1 <= Important
note - Password protected files
The BestKeeper Excel spreadsheet ZIP files is password
protected. By receiving your requested passwords, we will include your e-mail address to our Gene-Qunatification.info and real-time-PCR.info mailing list, and you will receive our monthly appearing Gene Quantification Newsletter called qPCR NEWS and new information about real-time PCR hardware, software and chemistries. Important note - Computer configurations In
order to be able to run the Relative Expression Software Tool
correctly Tools => Macro => Security =>
Trusted Sources and to set the 'Security Level' to 'Medium' as
shown in the following two screen shot pictures.
Page 1: Introduction & Input - real-time PCR Efficiency
Page 2: Input - of Housekeeping Gene CP Data
Page 3: Input - of Target Gene CP Data
Page 4: Output - HKG CP Data & Repeated Pair-wise Correlation Analysis of HKG
Page 5: Output - Repeated Pair-wise Regression Analysis of HKG
Page 6: Output - HKG CP Data & Repeated Pair-wise Correlation Analysis of HKG
Page 7: Output - Repeated Pair-wise Correlation and Regression Analysis of TG
Page 8: Output - Sample Intergrity
Page 9: Output - Graph of HKG CPs
Page 10: Output - Graph of TG CPs
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